LST1Analysis MVA

Location of LST1 data at PIC

• Directory: /pnfs/pic.es/data/cta/LST/Data/ZFITS/

• Web: LST1 ZFITS files on the web
  Same user/password as in CTA portal

• Raw data http://data.lstcam.pic.es/tape/

• DL1 data http://data.lstcam.pic.es/DL1/

• DL2 data http://data.lstcam.pic.es/DL2/

Location of LST1 at La Palma

• Directory: /fefs/onsite/data
  Use cp01/cp02 to copy out data, never the login machine

Run summary info/data-check

• Run-summary web in GAE
  LST1 account

CTApipe

git clone https://github.com/cta-observatory/ctapipe.git
cd ctapipe

CTAPIPE_VER=0.10.5
wget https://raw.githubusercontent.com/cta-observatory/ctapipe/v$CTAPIPE_VER/environment.yml
conda env create -n cta -f environment.yml
conda activate cta
conda install -c conda-forge ctapipe=$CTAPIPE_VER

Analysis of LST1 data

Donwload LST analysis software cta-lstchain (wrapper that uses centrally supported ctapipe routines)

git clone https://github.com/cta-observatory/cta-lstchain.git
cd cta-lstchain

LSTCHAIN_VER=0.7.2
wget https://raw.githubusercontent.com/cta-observatory/cta-lstchain/v$LSTCHAIN_VER/environment.yml
conda env create -n lst -f environment.yml
conda activate lst
pip install lstchain==$LSTCHAIN_VER
rm environment.yml

In case of problems with conda env try mamba:
conda install -c conda-forge -n base mamba
mamba env create -f environment.yml

Files needed to analyze golden Run 442 (20190527):

• Pedestal run: pedestal_file_run446_0000.fits
• Low level DRS4 calibration: calibration.hdf5

Run directly jupyter notebook

cd cta-lstchain/notebooks
jupyter notebook
-> select Analyze_real_muon_data.ipynb

Convert example jupyter notebook to python

cd cta-lstchain/notebooks
jupyter nbconvert --to python Analyze_real_muon_data.ipynb

Fix path of data, pedestal and calibration and run!

Lines to fix:
source = event_source(input_url="../data/LST-1.4.Run00442.0001.fits.fz",max_events=None)
pedestal_path="../pedestal/pedestal_file_run446_0000.fits",
with HDF5TableReader('../calibration/calibration.hdf5') as h5_table:

python Analyze_real_muon_data.py

Gammapy

FIX UBUNTU
conda create -n gammapyenv python=3.7
conda activate gammapyenv
conda install gammapy=0.18.2 sherpa=4.12.0
conda install jupyter ipython jupyterlab pandas healpy iminuit naima emcee corner parfice
gammapy info

curl -O https://gammapy.org/download/install/gammapy-0.18.2-environment.yml
conda env create -f gammapy-0.18.2-environment.yml
conda activate gammapy-0.18.2
gammapy info

Ctools

Installation MAC

conda config --append channels conda-forge
conda config --append channels cta-observatory
conda create -n ctathai python=3.8
conda activate ctathai
conda install ctools
conda install matplotlib
conda install jupyterlab
export CALDB=/path/where/you/installed/IRF/caldb
export HESSDATA=/path/where/you/installed/HESS/data

Installation UBUNTU

conda create -n ctathai python=3.7
conda activate ctathai
conda install -c cta-observatory ctools=1.7.4
conda install matplotlib
conda install jupyterlab
export CALDB=/path/where/you/installed/IRF/caldb
export HESSDATA=/path/where/you/installed/HESS/data

Commands:

ctobssim  edisp=yes
fv events.fits
ctskymap 
ds9 skymap.fits 
ctbin
fv cntcube.fits 
ctexpcube
ctpsfcube
ctbkgcube
ctlike
csresmap
csresspec components=yes
$CTOOLS/share/examples/python/show_residuals.py resspec.fits

Fermipy

conda config --append channels fermi
conda create -n fermiset -c conda-forge -c fermi fermitools=2.0.8 python=3.7 clhep=2.4.4.1
conda activate fermiset
conda install fermipy

Ubuntu 20.04 issues

• Mars/root does not work so gcc needs to be downgrade to version 5: gcc downgrade
• System Program Problem Detected at reboot:

sudo gedit /etc/default/apport 
enabled=0

• Problem installing ctools with conda, modify ~/.condarc

channel_priority: flexible